IMP.bff
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AV Member List

This is the complete list of members for AV, including all inherited members.

create_path_map_header()AV
do_setup_particle(Model *m, ParticleIndex pi, ParticleIndex pi_source, double linker_length=20.0, const algebra::Vector3D radii=algebra::Vector3D(3.5, 0, 0), double linker_width=0.5, double allowed_sphere_radius=1.5, double contact_volume_thickness=0.0, double contact_volume_trapped_fraction=-1, double simulation_grid_resolution=1.5)AVinlinestatic
get_av_key(unsigned int i)AVinlinestatic
get_derivatives() constAVinline
get_is_setup(Model *m, ParticleIndex pi)AVinlinestatic
get_map() constAV
get_mean_position(bool include_source=true) constAV
get_parameter() constAVinlineprotected
get_parameters_are_optimized() constAVinline
get_particle() constAVinline
get_particle(unsigned int i) constAVinline
get_particle_index() constAVinline
get_particle_index(unsigned int i) constAVinline
get_particle_key(unsigned int i)AVinlinestatic
get_radii()AVinline
get_source() constAV
get_source_coordinates() constAV
IMP_DECORATOR_GET_SET(linker_length, get_av_key(0), Float, Float)AV
IMP_DECORATOR_GET_SET(radius1, get_av_key(1), Float, Float)AV
IMP_DECORATOR_GET_SET(radius2, get_av_key(2), Float, Float)AV
IMP_DECORATOR_GET_SET(radius3, get_av_key(3), Float, Float)AV
IMP_DECORATOR_GET_SET(linker_width, get_av_key(4), Float, Float)AV
IMP_DECORATOR_GET_SET(allowed_sphere_radius, get_av_key(5), Float, Float)AV
IMP_DECORATOR_GET_SET(contact_volume_thickness, get_av_key(6), Float, Float)AV
IMP_DECORATOR_GET_SET(contact_volume_trapped_fraction, get_av_key(7), Float, Float)AV
IMP_DECORATOR_GET_SET(simulation_grid_resolution, get_av_key(8), Float, Float)AV
IMP_DECORATOR_METHODS(AV, IMP::core::Gaussian)AV
IMP_DECORATOR_SETUP_1(AV, IMP::ParticleIndex, pi_source)AV
init_path_map()AV
resample(bool shift_xyz=true)AV
set_av_parameter(const nlohmann::json &j)AV
set_av_parameters_are_optimized(bool tf) constAVinline